| nucl1709 | Proto-Trans-New-Guinea | Trans-New Guinea | 360 |
| farw1236 | Proto-Far West | Lakes Plain | 117 |
| goro1272 | Proto-Eastern-Central | N,
Kainantu-Goroka | 76 |
| sout3148 | Proto-South-Adelbert | T,
M,
South Adelbert Range | 289 |
| koia1260 | Proto-Koiarian | T,
S,
Koiarian | 124 |
| dumu1247 | Proto-Dumut | N,
A,
A,
G,
Awyu-Dumut | 282 |
| cent2110 | Proto-Central-Tariku | L,
Tariku | 101 |
| musa1266 | Aisi | N,
M,
K,
S,
S,
E,
Aisian | 153 |
| cent2120 | Proto-Chimbu-Wahgi | Nuclear Trans New Guinea | 1 |
| croi1234 | Proto-Croisilles | N,
Madang | 189 |
| nort2909 | Proto-North-Binandere | T,
G,
B,
North Binanderean | 12 |
| numu1240 | Proto-Tibor-Omosa | T,
M,
C,
Pihom | 117 |
| fait1240 | Kulsab | N,
M,
K,
S,
S,
East Sogeram | 35 |
| awyu1263 | Proto-Awyu-Dumut | N,
A,
A,
Greater Awyu | 287 |
| numu1240 | Proto-Numugen | T,
M,
C,
P,
Numugenan | 59 |
| nucl1603 | Proto-Nuclear-Binandere | T,
G,
B,
Nuclear Binanderean | 124 |
| goro1272 | Proto-Goroka | N,
Kainantu-Goroka | 1 |
| | Proto-North-Adelbert | T,
M,
Croisilles | 486 |
| | Proto-Sub-Rai | T,
M,
Rai Coast | 8 |
| manu1261 | Proto-Manubaran | T,
S,
Manubaran | 171 |
| enga1251 | Proto-Engan | N,
Enga-Kewa-Huli | 24 |
| soge1235 | Proto-Sogeram | T,
M,
S,
+Sogeram | 103 |
| west2582 | Proto-West-Tariku | L,
T,
West | 129 |
| | Magɨ | T,
M,
S,
W,
Emuan | 85 |
| kain1274 | Proto-Kainantu | N,
Kainantu-Goroka | 1 |
| kowa1247 | Proto-Korak-Waskia | N,
M,
C,
Greater Northern Adelbert | 11 |
| ziaa1250 | Proto-Zia-Mawae | T,
G,
B,
North Binanderean | 0 |
| doro1266 | Proto-Doromu | Manubaran | 179 |
| payn1244 | Manat | N,
M,
K,
S,
S,
A,
Greater West Sogeram | 46 |
| kain1274 | Proto-Eastern | N,
Kainantu-Goroka | 48 |
| lake1255 | Proto-Lakes-Plain | Lakes Plain | 134 |
| mada1298 | Proto-Madang | T,
Madang | 251 |
| mari1439 | Proto-Maria | T,
S,
Manubaran | 190 |
| okok1235 | Proto-Ok-Oksapmin | T,
Ok-Awyu | 124 |
| | Proto-Isumrud | T,
M,
C,
Isumrud | 17 |
| raic1241 | Proto-Rai-Coast | T,
M,
Rai Coast | 258 |
| koia1261 | Proto-Koiariac | Koiarian | 85 |
| fini1244 | Proto-Finisterre-Huon | Nuclear Trans New Guinea | 1 |
| atan1241 | Proto-Western-Sogeram | T,
M,
S,
+,
Western | 62 |
| bara1376 | Proto-Baraic | Koiarian | 99 |
| sout2934 | Proto-South-Binandere | T,
G,
B,
N,
South Binanderean | 37 |
| coas1297 | Proto-Coastal-Binandere | N,
G,
B,
N,
South Binanderean | 45 |
